# Bootstrapping¶

“Bootstrapping” in PISM means starting a modeling run with less than sufficient data, and letting essentially heuristic models fill in needed fields. These heuristics are applied before the first time step is taken, so they are part of an initialization process. Bootstrapping uses the option -bootstrap; see section First run for an example.

The need for an identified stage like “bootstrapping” comes from the fact that initial conditions for the evolution equations describing an ice sheet are not all observable. As a principal example of this problem, these initial conditions include the temperature within the ice. Glaciological observations, specifically remote-sensed observations which cover a large fraction or all of an ice sheet, never include this temperature field in practice.

Ice sheet models often need to do something like this to get “reasonable” initial fields within the ice:

1. start only with (potentially) observable quantities like surface elevation, ice thickness, ice surface temperature, surface mass balance, and geothermal flux,
2. “bootstrap” as defined here, using heuristics to fill in temperatures at depth and to give a preliminary estimate of the basal sliding condition and the three-dimensional velocity field, and
1. either do a long run, often holding the current geometry and surface conditions steady, to evolve toward a steady state which has compatible temperature, stress, and velocity fields,
2. or do a long run using an additional (typically spatially-imprecise) historical record from an ice core or a sea bed core (or both), to apply forcing to the surface temperature or sea level (for instance), but with the same functional result of filling in temperature, stress, and velocity fields.

When using -bootstrap you will need to specify both grid dimensions (using -Mx, -My and -Mz; see section Spatial grid) and the height of the computational box for the ice with -Lz (section Computational box). The data read from the file can determine the horizontal extent of the model, if options -Lx, -Ly are not set. The additional required specification of vertical extent by -Lz is reasonably natural because typical data used in “bootstrapping” are two-dimensional. Using -bootstrap without specifying all four options -Mx, -My, -Mz, -Lz is an error.

If -Lx and -Ly specify horizontal grid dimensions smaller than in the bootstrapping file, PISM will cut out the center portion of the domain. Alternatively, options -x_range and -y_range each take a list of two numbers, a list of minimum and maximum $$x$$ and $$y$$ coordinates, respectively (in meters), which makes it possible to select a subset that is not centered in the bootstrapping file’s grid.

For the key issue of what heuristic is used to determine the temperatures at depth, there are two methods. The default method uses ice thickness, surface temperature, surface mass balance, and geothermal flux. The temperature is set to the solution of a steady one-dimensional differential equation in which conduction and vertical advection are in balance, and the vertical velocity linearly-interpolates between the surface mass balance rate at the top and zero at the bottom. The non-default method, set with option -boot_temperature_heuristic quartic_guess, was the default in older PISM versions (stable0.5 and earlier); it does not use the surface mass balance and instead makes a more-heuristic estimate of the vertical temperature profile based only on the ice thickness, surface temperature, and geothermal flux.

## -bootstrap file format¶

Allowed formats for a bootstrapping file are relatively simple to describe.

1. NetCDF variables should have the units containing a UDUNITS-compatible string. If this attribute is missing, PISM will assume that a field uses MKS units.[1]

2. NetCDF coordinate variables should have standard_name or axis attributes. These are used to determine which spatial dimension a NetCDF dimension corresponds to; for example see ncdump -h output from a file produced by PISM. The x and y dimensions need not be called “x” and “y”.

3. Coordinate variables have to be strictly-increasing.

4. Three-dimensional variables will be ignored in bootstrapping.

5. The standard_name attribute is used, when available, to identify a variable, so variable names need not match corresponding variables in a PISM output file. See the CF standard names used by PISM for a list of CF standard names used in PISM.

Specifically, the bed elevation (topography) is read by standard_name = bedrock_altitude and the ice thickness by standard_name = land_ice_thickness.

6. Any two-dimensional variable except bed topography and ice thickness may be missing. For missing variables some heuristic will be applied. See Table 4 for a sketch of the data necessary for bootstrapping; see src/base/iMbootstrap.cc for all further details.

7. Surface elevation is ignored if present. Users with surface elevation and bed elevation data should compute the ice thickness variable, put it in the bootstrapping file, and set its standard_name to land_ice_thickness.

 [1] PISM automatically converts data present in an input file to MKS. This means that having ice thickness in feet or temperature in Fahrenheit is allowed.

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